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1

[IEEE Signal Processing (ICICS) - Macau, China (2009.12.8-2009.12.10)] 2009 7th International Conference on Information, Communications and Signal Processing (ICICS) - Need for speed: Fast Stockwell transform (FST) with O(N) complexity

Bhandari, Ayush, Marziliano, Pina, Barrutia, Arrate Munoz

Year:

2009

Language:

english

File:

PDF, 550 KB

english, 2009

2

3D reconstruction of histological sections: Application to mammary gland tissue

Ignacio Arganda-Carreras, Rodrigo Fernández-González, Arrate Muñoz-Barrutia, Carlos Ortiz-De-Solorzano

Journal:

Microscopy Research and Technique

Year:

2010

Language:

english

File:

PDF, 946 KB

english, 2010

3

Quantitative in vivo microscopy: the return from the ‘omics’

Rodrigo Fernández-González, Arrate Muñoz–Barrutia, Mary Helen Barcellos-Hoff, Carlos Ortiz-de-Solorzano

Journal:

Current Opinion in Biotechnology

Year:

2006

Language:

english

File:

PDF, 478 KB

english, 2006

4

Longitudinal study of a mouse model of chronic pulmonary inflammation using breath hold gated micro-CT

Xabier Artaechevarria, David Blanco, Daniel Pérez-Martín, Gabriel de Biurrun, Luis M. Montuenga, Juan P. de Torres, Javier J. Zulueta, Gorka Bastarrika, Arrate Muñoz-Barrutia, Carlos Ortiz-de-Solorzan

Journal:

European Radiology

Year:

2010

Language:

english

File:

PDF, 704 KB

english, 2010

5

Individual nodule tracking in micro-CT images of a longitudinal lung cancer mouse model

Rudyanto, Rina D., Bastarrika, Gorka, de Biurrun, Gabriel, Agorreta, Jackeline, Montuenga, Luis M., Ortiz-de-Solorzano, Carlos, Muñoz-Barrutia, Arrate

Journal:

Medical Image Analysis

Year:

2013

Language:

english

File:

PDF, 1.89 MB

english, 2013

6

Robust, Standardized Quantification of Pulmonary Emphysema in Low Dose CT Exams

Ceresa, Mario, Bastarrika, Gorka, de Torres, Juan P., Montuenga, Luis M., Zulueta, Javier J., Ortiz-de-Solorzano, Carlos, Muñoz-Barrutia, Arrate

Journal:

Academic Radiology

Year:

2011

Language:

english

File:

PDF, 875 KB

english, 2011

7

A Novel Automated Microscopy Platform for Multiresolution Multispectral Early Detection of Lung Cancer Cells in Bronchoalveolar Lavage Samples

Pengo, Thomas, Munoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos

Journal:

IEEE Systems Journal

Year:

2014

Language:

english

File:

PDF, 715 KB

english, 2014

8

Toward a Morphodynamic Model of the Cell: Signal processing for cell modeling

Ortiz de Solorzano, Carlos, Munoz-Barrutia, Arrate, Meijering, Erik, Kozubek, Michal

Journal:

IEEE Signal Processing Magazine

Year:

2015

Language:

english

File:

PDF, 1.52 MB

english, 2015

9

[IEEE 2012 IEEE 9th International Symposium on Biomedical Imaging (ISBI 2012) - Barcelona, Spain (2012.05.2-2012.05.5)] 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) - Characterization of emphysema in low dose computed tomography images using maximum likelihood estimation of the scale exponent

Ceresa, Mario, Munoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos

Year:

2012

Language:

english

File:

PDF, 335 KB

english, 2012

10

[IEEE 2008 5th IEEE International Symposium on Biomedical Imaging (ISBI 2008) - Paris, France (2008.05.14-2008.05.17)] 2008 5th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Automation of the detection of lung cancer cells in minimal samples of bronchioalveolar lavage

Ortiz-de-Solorzano, Carlos, Pengo, Thomas, Galarraga, Miguel, Munoz-Barrutia, Arrate

Year:

2008

Language:

english

File:

PDF, 623 KB

english, 2008

11

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Registration of multiple stained histological sections

Borovec, Jiri, Kybic, Jan, Busta, Michal, Ortiz-de-Solorzano, Carlos, Munoz-Barrutia, Arrate

Year:

2013

Language:

english

File:

PDF, 1.47 MB

english, 2013

12

Interactive lung segmentation in abnormal human and animal chest CT scans

Kockelkorn, Thessa T. J. P., Schaefer-Prokop, Cornelia M., Bozovic, Gracijela, Muñoz-Barrutia, Arrate, van Rikxoort, Eva M., Brown, Matthew S., de Jong, Pim A., Viergever, Max A., van Ginneken, Bram

Journal:

Medical Physics

Year:

2014

Language:

english

File:

PDF, 2.22 MB

english, 2014

13

[IEEE 2008 15th IEEE International Conference on Image Processing - San Diego, CA, USA (2008.10.12-2008.10.15)] 2008 15th IEEE International Conference on Image Processing - Fast adaptive elliptical filtering using box splines

Chaudhury, Kunal Narayan, Barrutia, Arrate Munoz, Unser, Michael

Year:

2008

Language:

english

File:

PDF, 139 KB

english, 2008

14

[IEEE 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Lyon, France (2007.08.22-2007.08.26)] 2007 29th Annual International Conference of the IEEE Engineering in Medicine and Biology Society - Computer Assisted Detection of Cancer Cells in Minimal Samples of Lung Cancer

Ortiz-de-Solorzano, Carlos, Ucar-Vargas, Beatriz, Pengo, Thomas, Zudaire, Isabel, Montuenga, Luis M, Munoz-Barrutia, Arrate

Year:

2007

Language:

english

File:

PDF, 272 KB

english, 2007

15

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Automatic quantification of filopodia-based cell migration

Maska, Martin, Morales, Xabier, Munoz-Barrutia, Arrate, Rouzaut, Ana, Ortiz-de-Solorzano, Carlos

Year:

2013

Language:

english

File:

PDF, 1.18 MB

english, 2013

16

[IEEE 2012 IEEE 9th International Symposium on Biomedical Imaging (ISBI 2012) - Barcelona, Spain (2012.05.2-2012.05.5)] 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) - Individual nodule tracking in micro-CT images of a mouse model of lung cancer

Rudyanto, Rina D., Agirre, Ainhoa, Ortiz-de-Solorzano, Carlos, Munoz-Barrutia, Arrate

Year:

2012

Language:

english

File:

PDF, 893 KB

english, 2012

17

[IEEE 2013 IEEE 10th International Symposium on Biomedical Imaging (ISBI 2013) - San Francisco, CA, USA (2013.04.7-2013.04.11)] 2013 IEEE 10th International Symposium on Biomedical Imaging - Modeling airway probability

Rudyanto, Rina D., Munoz-Barrutia, Arrate, Diaz, Alejandro A., Ross, James, Washko, George R., Ortiz-de-Solorzano, Carlos, Estepar, Raul San Jose

Year:

2013

Language:

english

File:

PDF, 1.07 MB

english, 2013

18

[IEEE 2012 IEEE 9th International Symposium on Biomedical Imaging (ISBI 2012) - Barcelona, Spain (2012.05.2-2012.05.5)] 2012 9th IEEE International Symposium on Biomedical Imaging (ISBI) - Fast tracking of fluorescent cells based on the Chan-Vese model

Maska, Martin, Munoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos

Year:

2012

Language:

english

File:

PDF, 776 KB

english, 2012

19

[IEEE 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - Arlington, VA, USA (2007.04.12-2007.04.15)] 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro - RESTORATION OF MICRO-CT IMAGES USING LOCALLY ADAPTIVE B-SPLINE SMOOTHING

Artaechevarria, Xabier, Munoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos

Year:

2007

Language:

english

File:

PDF, 259 KB

english, 2007

20

Quantitative Bioimaging: Signal Processing in Light Microscopy [From the Guest Editors]

Munoz-Barrutia, Arrate, Kovacevic, Jelena, Kozubek, Michal, Meijering, Erik, Parvin, Braham

Journal:

IEEE Signal Processing Magazine

Year:

2015

Language:

english

File:

PDF, 365 KB

english, 2015

21

Quantitative Assessment of Emphysema Severity in Histological Lung Analysis

Marcos, J. Víctor, Muñoz-Barrutia, Arrate, Ortiz-de-Solórzano, Carlos, Cristóbal, Gabriel

Journal:

Annals of Biomedical Engineering

Year:

2015

Language:

english

File:

PDF, 1.84 MB

english, 2015

22

SPIE Proceedings [SPIE SPIE Medical Imaging - Orlando, Florida, United States (Saturday 21 February 2015)] Medical Imaging 2015: Computer-Aided Diagnosis - Quantification of pulmonary vessel diameter in low-dose CT images

Hadjiiski, Lubomir M., Tourassi, Georgia D., Rudyanto, Rina D., Ortiz de Solórzano, Carlos, Muñoz-Barrutia, Arrate

Year:

2015

Language:

english

File:

PDF, 1.14 MB

english, 2015

23

[IEEE 2007 IEEE International Conference on Image Processing - San Antonio, TX, USA (2007.09.16-2007.10.19)] 2007 IEEE International Conference on Image Processing - Restoration of Biomedical Images using Locally Adaptive B-Spline Smoothing

Artaechevarria, Xabier, Munoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos

Year:

2007

Language:

english

File:

PDF, 344 KB

english, 2007

24

The Variation of Root Exudates from the Hyperaccumulator Sedum alfredii under Cadmium Stress: Metabonomics Analysis

Luo, Qing, Sun, Lina, Hu, Xiaomin, Zhou, Ruiren, Muñoz-Barrutia, Arrate

Journal:

Year:

2014

Language:

english

File:

PDF, 971 KB

english, 2014

25

Quantification of Lung Damage in an Elastase-Induced Mouse Model of Emphysema

Muñoz-Barrutia, Arrate, Ceresa, Mario, Artaechevarria, Xabier, Montuenga, Luis M., Ortiz-de-Solorzano, Carlos

Journal:

International Journal of Biomedical Imaging

Year:

2012

Language:

english

File:

PDF, 2.89 MB

english, 2012

26

[IEEE 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Milan (2015.8.25-2015.8.29)] 2015 37th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC) - Characterization of the role of collagen network structure and composition in cancer cell migration

Anguiano, Maria, Castilla, Carlos, Maska, Martin, Ederra, Cristina, Fernandez-Marques, Javier, Pelaez, Rafael, Rouzaut, Ana, Munoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos

Year:

2015

Language:

english

File:

PDF, 1.25 MB

english, 2015

27

SPIE Proceedings [SPIE Medical Imaging - San Diego, CA (Saturday 16 February 2008)] Medical Imaging 2008: Image Processing - Efficient classifier generation and weighted voting for atlas-based segmentation: two small steps faster and closer to the combination oracle

Artaechevarria, Xabier, Muñoz-Barrutia, Arrate, Ortiz-de-Solórzano, Carlos, Reinhardt, Joseph M., Pluim, Josien P. W.

Year:

2008

Language:

english

File:

PDF, 254 KB

english, 2008

28

SPIE Proceedings [SPIE SPIE Medical Imaging - Lake Buena Vista, FL (Saturday 7 February 2009)] Medical Imaging 2009: Biomedical Applications in Molecular, Structural, and Functional Imaging - Fast murine airway segmentation and reconstruction in micro-CT images

Artaechevarria, Xabier, Hu, Xiaoping P., Clough, Anne V., Muñoz-Barrutia, Arrate, van Ginneken, Bram, Ortiz-de-Solórzano, Carlos

Year:

2009

Language:

english

File:

PDF, 378 KB

english, 2009

29

SPIE Proceedings [SPIE SPIE Medical Imaging - Orlando, Florida, United States (Saturday 21 February 2015)] Medical Imaging 2015: Computer-Aided Diagnosis - Atlas-based segmentation of brainstem regions in neuromelanin-sensitive magnetic resonance images

Hadjiiski, Lubomir M., Tourassi, Georgia D., Puigvert, Marc, Castellanos, Gabriel, Uranga, Javier, Abad, Ricardo, Fernández-Seara, María A., Pastor, Pau, Pastor, María A., Muñoz-Barrutia, Arrate, Orti

Year:

2015

Language:

english

File:

PDF, 954 KB

english, 2015

30

SPIE Proceedings [SPIE SPIE Optical Engineering + Applications - San Diego, CA (Sunday 2 August 2009)] Wavelets XIII - Sparse algebraic reconstruction for fluorescence mediated tomography

Muñoz-Barrutia, Arrate, Goyal, Vivek K., Papadakis, Manos, Pardo-Martin, Carlos, Pengo, Thomas, Van De Ville, Dimitri, Ortiz-de-Solorzano, Carlos

Year:

2009

Language:

english

File:

PDF, 712 KB

english, 2009

31

SPIE Proceedings [SPIE Medical Imaging - San Diego, CA (Saturday 16 February 2008)] Medical Imaging 2008: Physics of Medical Imaging - Photon migration simulator for fluorescence tomography

Pardo-Martín, Carlos, Hsieh, Jiang, Samei, Ehsan, Pengo, Thomas, Muñoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos

Year:

2008

Language:

english

File:

PDF, 966 KB

english, 2008

32

[IEEE 2015 IEEE International Conference on Image Processing (ICIP) - Quebec City, QC, Canada (2015.9.27-2015.9.30)] 2015 IEEE International Conference on Image Processing (ICIP) - Quantification of the 3D collagen network geometry in confocal reflection microscopy

Maska, Martin, Ederra, Cristina, Fernandez-Marques, Javier, Munoz-Barrutia, Arrate, Kozubek, Michal, Ortiz-de-Solorzano, Carlos

Year:

2015

Language:

english

File:

PDF, 1.06 MB

english, 2015

33

[IEEE 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI 2016) - Prague, Czech Republic (2016.4.13-2016.4.16)] 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI) - L1-regularized reconstruction for traction force microscopy

Sune-Aunon, Alejandro, Jorge-Penas, Alvaro, Van Oosterwyck, Hans, Munoz-Barrutia, Arrate

Year:

2016

Language:

english

File:

PDF, 1.50 MB

english, 2016

34

[IEEE 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017) - Melbourne, Australia (2017.4.18-2017.4.21)] 2017 IEEE 14th International Symposium on Biomedical Imaging (ISBI 2017) - Super-resolved Traction Force Microscopy over whole cells

Sune-Aunon, Alejandro, Jorge-Penas, Alvaro, Van Oosterwyck, Hans, Munoz-Barrutia, Arrate

Year:

2017

Language:

english

File:

PDF, 1.35 MB

english, 2017

35

[IEEE 2017 25th European Signal Processing Conference (EUSIPCO) - Kos, Greece (2017.8.28-2017.9.2)] 2017 25th European Signal Processing Conference (EUSIPCO) - Automated analysis of collagen networks via microscopy

Sune-Aunon, Alejandro, Gonzalez-Arjona, Mario, Vidal, Alejandro, Lanillos, Javier, Munoz-Barrutia, Arrate

Year:

2017

Language:

english

File:

PDF, 975 KB

english, 2017

36

Full L1-regularized Traction Force Microscopy over whole cells

Suñé-Auñón, Alejandro, Jorge-Peñas, Alvaro, Aguilar-Cuenca, Rocío, Vicente-Manzanares, Miguel, Van Oosterwyck, Hans, Muñoz-Barrutia, Arrate

Journal:

BMC Bioinformatics

Year:

2017

Language:

english

File:

PDF, 4.27 MB

english, 2017

37

Semi-Supervised Segmentation of Ultrasound Images Based on Patch Representation and Continuous Min Cut

Ciurte, Anca, Bresson, Xavier, Cuisenaire, Olivier, Houhou, Nawal, Nedevschi, Sergiu, Thiran, Jean-Philippe, Cuadra, Meritxell Bach, Muñoz-Barrutia, Arrate

Journal:

Year:

2014

Language:

english

File:

PDF, 3.23 MB

english, 2014

38

Combined Micro-PET/Micro-CT Imaging of Lung Tumours in SPC-raf and SPC-myc Transgenic Mice

Rodt, Thomas, Luepke, Matthias, Boehm, Claudia, Hueper, Katja, Halter, Roman, Glage, Silke, Hoy, Ludwig, Wacker, Frank, Borlak, Juergen, von Falck, Christian, Muñoz-Barrutia, Arrate

Journal:

Year:

2012

Language:

english

File:

PDF, 333 KB

english, 2012

39

Monitoring Hypoxia Induced Changes in Cochlear Blood Flow and Hemoglobin Concentration Using a Combined Dual-Wavelength Laser Speckle Contrast Imaging and Doppler Optical Microangiography System

Reif, Roberto, Qin, Jia, Shi, Lei, Dziennis, Suzan, Zhi, Zhongwei, Nuttall, Alfred L., Wang, Ruikang K., Muñoz-Barrutia, Arrate

Journal:

Year:

2012

Language:

english

File:

PDF, 1.67 MB

english, 2012

40

A Novel Dictionary Based Computer Vision Method for the Detection of Cell Nuclei

De Vylder, Jonas, Aelterman, Jan, Lepez, Trees, Vandewoestyne, Mado, Douterloigne, Koen, Deforce, Dieter, Philips, Wilfried, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 1001 KB

english, 2013

41

Intravital Immunofluorescence for Visualizing the Microcirculatory and Immune Microenvironments in the Mouse Ear Dermis

Kilarski, Witold W., Güç, Esra, Teo, Jeremy C. M., Oliver, S. Ryan, Lund, Amanda W., Swartz, Melody A., Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 22.66 MB

english, 2013

42

Smokers with CT Detected Emphysema and No Airway Obstruction Have Decreased Plasma Levels of EGF, IL-15, IL-8 and IL-1ra

de-Torres, Juan P., Blanco, David, Alcaide, Ana B., Seijo, Luis M., Bastarrika, Gorka, Pajares, María José, Muñoz-Barrutia, Arrate, Ortiz-de-Solorzano, Carlos, Pio, Ruben, Campo, Arantza, Montes, Usua

Journal:

Year:

2013

Language:

english

File:

PDF, 341 KB

english, 2013

43

Single Cell Analysis of Drug Distribution by Intravital Imaging

Giedt, Randy J., Koch, Peter D., Weissleder, Ralph, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 1.15 MB

english, 2013

44

CT Air Trapping Is Independently Associated with Lung Function Reduction over Time

Mets, Onno M., de Jong, Pim A., van Ginneken, Bram, Kruitwagen, Cas L. J. J., Prokop, Mathias, Oudkerk, Matthijs, Lammers, Jan-Willem J., Zanen, Pieter, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 205 KB

english, 2013

45

Optimisation of Wavelength Modulated Raman Spectroscopy: Towards High Throughput Cell Screening

Praveen, Bavishna B., Mazilu, Michael, Marchington, Robert F., Herrington, C. Simon, Riches, Andrew, Dholakia, Kishan, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 572 KB

english, 2013

46

Low-Dose Micro-CT Imaging for Vascular Segmentation and Analysis Using Sparse-View Acquisitions

Vandeghinste, Bert, Vandenberghe, Stefaan, Vanhove, Chris, Staelens, Steven, Van Holen, Roel, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 1.28 MB

english, 2013

47

Thoracic Tumor Volume Delineation in 4D-PET/CT by Low Dose Interpolated CT for Attenuation Correction

Huang, Tzung-Chi, Wang, Yao-Ching, Kao, Chia-Hung, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 1.21 MB

english, 2013

48

Non-Local Means Denoising of Dynamic PET Images

Dutta, Joyita, Leahy, Richard M., Li, Quanzheng, Muñoz-Barrutia, Arrate

Journal:

Year:

2013

Language:

english

File:

PDF, 11.10 MB

english, 2013

49

Automated Method for Identification and Artery-Venous Classification of Vessel Trees in Retinal Vessel Networks

Joshi, Vinayak S., Reinhardt, Joseph M., Garvin, Mona K., Abramoff, Michael D., Muñoz-Barrutia, Arrate

Journal:

Year:

2014

Language:

english

File:

PDF, 7.02 MB

english, 2014

50

Automated Coronary Artery Calcification Scoring in Non-Gated Chest CT: Agreement and Reliability

Takx, Richard A. P., de Jong, Pim A., Leiner, Tim, Oudkerk, Matthijs, de Koning, Harry J., Mol, Christian P., Viergever, Max A., Išgum, Ivana, Muñoz-Barrutia, Arrate

Journal:

Year:

2014

Language:

english

File:

PDF, 332 KB

english, 2014

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